Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF331

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_type
cell line
sex
female
dev stage
adult
age
69 year
donor ID
ENCDO000AAE
lab
Michael Snyder, Stanford
source
Kevin White
health state
breast cancer (adenocarcinoma)
cell line
MCF-7

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/716003cd-3ce7-41ce-b1e3-6f203b6632a0/@@download/attachment/ENCODE4%20_Snyder_ChIP-seq_BiorupterTruSeqProtocol_v1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
63405196
Reads aligned (%)
69.5
Duplicates removed (%)
11.1
Number of peaks
1767 (qval < 1E-05)

hg19

Number of total reads
63405196
Reads aligned (%)
68.9
Duplicates removed (%)
11.4
Number of peaks
827 (qval < 1E-05)

Base call quality data from DBCLS SRA