Antigen

Antigen Class

TFs and others

Antigen

ZNF331

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

sample_type

cell line

sex

female

dev stage

adult

age

69 year

donor ID

ENCDO000AAE

lab

Michael Snyder, Stanford

source

Kevin White

health state

breast cancer (adenocarcinoma)

cell line

MCF-7

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/716003cd-3ce7-41ce-b1e3-6f203b6632a0/@@download/attachment/ENCODE4%20_Snyder_ChIP-seq_BiorupterTruSeqProtocol_v1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

63405196

Reads aligned (%)

69.5

Duplicates removed (%)

11.1

Number of peaks

1767 (qval < 1E-05)

hg19

Number of total reads

63405196

Reads aligned (%)

68.9

Duplicates removed (%)

11.4

Number of peaks

827 (qval < 1E-05)